{ "resourceType" : "CodeSystem", "id" : "OSLAB-microbiology-reports", "meta" : { "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablecodesystem"] }, "text" : { "status" : "generated", "div" : "

Generated Narrative: CodeSystem OSLAB-microbiology-reports

Profile: Shareable CodeSystem

This case-insensitive code system https://fhir.osbornemj.com/ig/CodeSystem/OSLAB-microbiology-reports defines the following codes:

CodeDisplayDefinition
ADFUNG Fungal Culture (M/C/S)Fungal Culture (M/C/S)
BC Blood Culture (M/C/S)Blood Culture (M/C/S)
CAS Candida auris Screen CultureCandida auris Screen Culture
CSF CSF Culture (M/C/S)CSF Culture (M/C/S)
CSFS CSF Subarachnoid Culture (M/C/S)CSF Subarachnoid Culture (M/C/S)
ENT Ear, Nose, Throat and Conjunctival SwabEar, Nose, Throat and Conjunctival Swab
EYE Eye Invasive Culture (M/C/S)Eye Invasive Culture (M/C/S)
FAEMIC Faeces Microscopy (RBC,WBC) OnlyFaeces Microscopy (RBC,WBC) Only
FLBCM Sterile Fluid Culture in Blood Culture MSterile Fluid Culture in Blood Culture M
FLPLUS Sterile Fluid Culture plus Fluid in BlooSterile Fluid Culture plus Fluid in Bloo
FLUID Sterile Fluid Culture (M/C/S)Sterile Fluid Culture (M/C/S)
FUNGI Skin, Hair, Nail Dermatophyte Culture (MSkin, Hair, Nail Dermatophyte Culture (M
GBS Group B Streptococcus Culture Screen (M/Group B Streptococcus Culture Screen (M/
GENIT Genital Swab Culture (M/C/S)Genital Swab Culture (M/C/S)
MRSA MRSA Screen CultureMRSA Screen Culture
PUS Deep Invasive Pus or Swab Culture (M/C/SDeep Invasive Pus or Swab Culture (M/C/S
RESP Respiratory Sputum or ETT Culture (M/C/SRespiratory Sputum or ETT Culture (M/C/S
RESPF Respiratory Bronchoscopic Collection CulRespiratory Bronchoscopic Collection Cul
SITE Superficial Pus or Swab Culture (M/C/S)Superficial Pus or Swab Culture (M/C/S)
TIP Tip Culture (M/C/S)Tip Culture (M/C/S)
TIS Tissue Culture (M/C/S)Tissue Culture (M/C/S)
URINE Urine Culture (M/C/S)Urine Culture (M/C/S)
VRES VRE Screen CultureVRE Screen Culture
" }, "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm", "valueInteger" : 0 }], "url" : "https://fhir.osbornemj.com/ig/CodeSystem/OSLAB-microbiology-reports", "version" : "0.1.0", "name" : "OSLABMicrobiologyReportsCS", "title" : "OS LAB Microbiology Reports", "status" : "draft", "experimental" : false, "date" : "2026-02-28", "publisher" : "Michael J Osborne", "contact" : [{ "name" : "Michael J Osborne", "telecom" : [{ "system" : "url", "value" : "http://osbornemj.com" }] }], "description" : "The OS LAB Microbiology Reports code system includes codes for reporting of microbiology results.", "jurisdiction" : [{ "coding" : [{ "system" : "urn:iso:std:iso:3166", "code" : "AUS", "display" : "Australia" }] }], "caseSensitive" : false, "content" : "complete", "count" : 23, "concept" : [{ "code" : "ADFUNG", "display" : "Fungal Culture (M/C/S)", "definition" : "Fungal Culture (M/C/S)" }, { "code" : "BC", "display" : "Blood Culture (M/C/S)", "definition" : "Blood Culture (M/C/S)" }, { "code" : "CAS", "display" : "Candida auris Screen Culture", "definition" : "Candida auris Screen Culture" }, { "code" : "CSF", "display" : "CSF Culture (M/C/S)", "definition" : "CSF Culture (M/C/S)" }, { "code" : "CSFS", "display" : "CSF Subarachnoid Culture (M/C/S)", "definition" : "CSF Subarachnoid Culture (M/C/S)" }, { "code" : "ENT", "display" : "Ear, Nose, Throat and Conjunctival Swab", "definition" : "Ear, Nose, Throat and Conjunctival Swab" }, { "code" : "EYE", "display" : "Eye Invasive Culture (M/C/S)", "definition" : "Eye Invasive Culture (M/C/S)" }, { "code" : "FAEMIC", "display" : "Faeces Microscopy (RBC,WBC) Only", "definition" : "Faeces Microscopy (RBC,WBC) Only" }, { "code" : "FLBCM", "display" : "Sterile Fluid Culture in Blood Culture M", "definition" : "Sterile Fluid Culture in Blood Culture M" }, { "code" : "FLPLUS", "display" : "Sterile Fluid Culture plus Fluid in Bloo", "definition" : "Sterile Fluid Culture plus Fluid in Bloo" }, { "code" : "FLUID", "display" : "Sterile Fluid Culture (M/C/S)", "definition" : "Sterile Fluid Culture (M/C/S)" }, { "code" : "FUNGI", "display" : "Skin, Hair, Nail Dermatophyte Culture (M", "definition" : "Skin, Hair, Nail Dermatophyte Culture (M" }, { "code" : "GBS", "display" : "Group B Streptococcus Culture Screen (M/", "definition" : "Group B Streptococcus Culture Screen (M/" }, { "code" : "GENIT", "display" : "Genital Swab Culture (M/C/S)", "definition" : "Genital Swab Culture (M/C/S)" }, { "code" : "MRSA", "display" : "MRSA Screen Culture", "definition" : "MRSA Screen Culture" }, { "code" : "PUS", "display" : "Deep Invasive Pus or Swab Culture (M/C/S", "definition" : "Deep Invasive Pus or Swab Culture (M/C/S" }, { "code" : "RESP", "display" : "Respiratory Sputum or ETT Culture (M/C/S", "definition" : "Respiratory Sputum or ETT Culture (M/C/S" }, { "code" : "RESPF", "display" : "Respiratory Bronchoscopic Collection Cul", "definition" : "Respiratory Bronchoscopic Collection Cul" }, { "code" : "SITE", "display" : "Superficial Pus or Swab Culture (M/C/S)", "definition" : "Superficial Pus or Swab Culture (M/C/S)" }, { "code" : "TIP", "display" : "Tip Culture (M/C/S)", "definition" : "Tip Culture (M/C/S)" }, { "code" : "TIS", "display" : "Tissue Culture (M/C/S)", "definition" : "Tissue Culture (M/C/S)" }, { "code" : "URINE", "display" : "Urine Culture (M/C/S)", "definition" : "Urine Culture (M/C/S)" }, { "code" : "VRES", "display" : "VRE Screen Culture", "definition" : "VRE Screen Culture" }] }